3V2N Protein Binding date Dec 12, 2011
title Compcc In Complex With Fatty Acids
authors J.Stetefeld
compound source
Molecule: Cartilage Oligomerization Matrix Protein (Coiled- Domain);
Chain: A, B, C, D, E
Engineered: Yes
Other_details: Compcc
 Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_common: Human
Expression_system_taxid: 511693
Expression_system_strain: Bl21
symmetry Space Group: P 1 21 1
R_factor 0.211 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.356 49.391 54.820 90.00 103.87 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand MYR enzyme
Primary referenceThe pentameric channel of COMPcc in complex with different fatty acids., MacFarlane AA, Orriss G, Okun N, Meier M, Klonisch T, Khajehpour M, Stetefeld J, PLoS One. 2012;7(11):e48130. doi: 10.1371/journal.pone.0048130. Epub 2012 Nov 2. PMID:23133613
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (3v2n.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 3V2N
  • CSU: Contacts of Structural Units for 3V2N
  • Structure Factors (136 Kb)
  • Retrieve 3V2N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3V2N from S2C, [Save to disk]
  • Re-refined 3v2n structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3V2N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3V2N
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3V2N, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3v2n] [3v2n_D] [3v2n_C] [3v2n_E] [3v2n_A] [3v2n_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3V2N
  • Community annotation for 3V2N at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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