3V2P Protein Binding date Dec 12, 2011
title Compcc In Complex With Fatty Acids
authors J.Stetefeld
compound source
Molecule: Cartilage Oligomerization Matrix Protein (Coiled- Domain);
Chain: A, B, C, D, E
Fragment: Compcc
Engineered: Yes
Other_details: Compcc
 Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
symmetry Space Group: P 1 21 1
R_factor 0.207 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
37.900 48.980 53.997 90.00 104.07 90.00
method X-Ray Diffractionresolution 1.87 Å
ligand STE enzyme
Primary referenceThe pentameric channel of COMPcc in complex with different fatty acids., MacFarlane AA, Orriss G, Okun N, Meier M, Klonisch T, Khajehpour M, Stetefeld J, PLoS One. 2012;7(11):e48130. doi: 10.1371/journal.pone.0048130. Epub 2012 Nov 2. PMID:23133613
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (45 Kb) [Save to disk]
  • Biological Unit Coordinates (3v2p.pdb1.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 3V2P
  • CSU: Contacts of Structural Units for 3V2P
  • Structure Factors (120 Kb)
  • Retrieve 3V2P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3V2P from S2C, [Save to disk]
  • Re-refined 3v2p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3V2P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3V2P
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3V2P, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3v2p_C] [3v2p] [3v2p_A] [3v2p_D] [3v2p_B] [3v2p_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3V2P
  • Community annotation for 3V2P at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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