3V3O Oxidoreductase Antibiotic date Dec 13, 2011
title Crystal Structure Of Tetx2 T280a: An Adaptive Mutant In Comp Tigecycline
authors K.Walkiewicz, Y.Shamoo
compound source
Molecule: Tetx2 Protein
Chain: A, B, C, D
Engineered: Yes
Mutation: Yes
 Organism_scientific: Bacteroides Thetaiotaomicron
Organism_taxid: 818
Strain: Bacteroides Thetaiotaomicron
Gene: Tetx2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28b
symmetry Space Group: P 1
R_factor 0.232 R_Free 0.298
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.126 80.080 87.238 111.02 89.97 92.97
method X-Ray Diffractionresolution 2.90 Å
ligand FAD, SO4, T1C enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (247 Kb) [Save to disk]
  • Biological Unit Coordinates (3v3o.pdb1.gz) 63 Kb
  • Biological Unit Coordinates (3v3o.pdb2.gz) 63 Kb
  • Biological Unit Coordinates (3v3o.pdb3.gz) 63 Kb
  • Biological Unit Coordinates (3v3o.pdb4.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 3V3O
  • CSU: Contacts of Structural Units for 3V3O
  • Structure Factors (233 Kb)
  • Retrieve 3V3O in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3V3O from S2C, [Save to disk]
  • Re-refined 3v3o structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3V3O in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3V3O
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3V3O, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3v3o] [3v3o_D] [3v3o_B] [3v3o_A] [3v3o_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3V3O
  • Community annotation for 3V3O at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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