OCA Atlas for 3V8E

3V8E

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

JJJ, MG, ZN

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, C, D, E, F, G, B		chromatin silencing at telom...

Primary reference

Structural and Kinetic Isotope Effect Studies of Nicotinamidase (Pnc1) from Saccharomyces cerevisiae., Smith BC, Anderson MA, Hoadley KA, Keck JL, Cleland WW, Denu JM, Biochemistry. 2012 Jan 10;51(1):243-56. Epub 2011 Dec 29. PMID:22229411

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (527 Kb) [Save to disk]

Biological Unit Coordinates (3v8e.pdb1.gz) 77 Kb

Biological Unit Coordinates (3v8e.pdb2.gz) 80 Kb

Biological Unit Coordinates (3v8e.pdb3.gz) 77 Kb

Biological Unit Coordinates (3v8e.pdb4.gz) 78 Kb

Biological Unit Coordinates (3v8e.pdb5.gz) 77 Kb

Biological Unit Coordinates (3v8e.pdb6.gz) 78 Kb

Biological Unit Coordinates (3v8e.pdb7.gz) 78 Kb

LPC: Ligand-Protein Contacts for 3V8E

CSU: Contacts of Structural Units for 3V8E

Structure Factors (1576 Kb)

Retrieve 3V8E in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3V8E from S2C, [Save to disk]

Re-refined 3v8e structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3V8E in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3v8e] [3v8e_A] [3v8e_B] [3v8e_C] [3v8e_D] [3v8e_E] [3v8e_F] [3v8e_G]

SWISS-PROT database:

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]