3VBQ Transferase Transferase Inhibitor date Jan 02, 2012
title Exploitation Of Hydrogen Bonding Constraints And Flat Hydrop Energy Landscapes In Pim-1 Kinase Needle Screening And Inhi Design
authors J.Liu
compound source
Molecule: Serinethreonine-Protein Kinase Pim-1
Chain: A
Fragment: Unp Residues 120-404
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pim1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 65
R_factor 0.176 R_Free 0.206
crystal
cell
length a length b length c angle alpha angle beta angle gamma
97.709 97.709 81.174 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.85 Å
ligand 0F5 enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceImplications of Promiscuous Pim-1 Kinase Fragment Inhibitor Hydrophobic Interactions for Fragment-Based Drug Design., Good AC, Liu J, Hirth B, Asmussen G, Xiang Y, Biemann HP, Bishop KA, Fremgen T, Fitzgerald M, Gladysheva T, Jain A, Jancsics K, Metz M, Papoulis A, Skerlj R, Stepp JD, Wei RR, J Med Chem. 2012 Mar 5. PMID:22339127
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk]
  • Biological Unit Coordinates (3vbq.pdb1.gz) 96 Kb
  • LPC: Ligand-Protein Contacts for 3VBQ
  • CSU: Contacts of Structural Units for 3VBQ
  • Structure Factors (453 Kb)
  • Retrieve 3VBQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VBQ from S2C, [Save to disk]
  • Re-refined 3vbq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3VBQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3VBQ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3VBQ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vbq_A] [3vbq]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3VBQ: [S_TKc ] by SMART
  • Other resources with information on 3VBQ
  • Community annotation for 3VBQ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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