OCA Atlas for 3VCY

3VCY

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

FFQ, GOL, PO4, UD1

enzyme

Gene

VFMJ11

Gene
Ontology

Chain	Function	Process	Component
D, A, C, B

Primary reference

Structure of MurA (UDP-N-acetylglucosamine enolpyruvyl transferase) from Vibrio fischeri in complex with substrate UDP-N-acetylglucosamine and the drug fosfomycin., Bensen DC, Rodriguez S, Nix J, Cunningham ML, Tari LW, Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 Apr 1;68(Pt 4):382-5. Epub, 2012 Mar 27. PMID:22505403

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (279 Kb) [Save to disk]

Biological Unit Coordinates (3vcy.pdb1.gz) 72 Kb

Biological Unit Coordinates (3vcy.pdb2.gz) 71 Kb

Biological Unit Coordinates (3vcy.pdb3.gz) 73 Kb

Biological Unit Coordinates (3vcy.pdb4.gz) 73 Kb

Biological Unit Coordinates (3vcy.pdb5.gz) 272 Kb

LPC: Ligand-Protein Contacts for 3VCY

CSU: Contacts of Structural Units for 3VCY

Structure Factors (1805 Kb)

Retrieve 3VCY in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3VCY from S2C, [Save to disk]

Re-refined 3vcy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3VCY in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3vcy] [3vcy_A] [3vcy_B] [3vcy_C] [3vcy_D]

SWISS-PROT database:

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