3VD8		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	EDO, GLC, K	enzyme
Gene Ontology	Chain Function Process Component A carbohydrate transmembrane t...
Primary reference	Structure of the Absent in Melanoma 2 (AIM2) Pyrin Domain Provides Insights into the Mechanisms of AIM2 Autoinhibition and Inflammasome Assembly., Jin T, Perry A, Smith P, Jiang J, Xiao TS, J Biol Chem. 2013 May 10;288(19):13225-35. doi: 10.1074/jbc.M113.468033. Epub, 2013 Mar 25. PMID:23530044

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk] Biological Unit Coordinates (3vd8.pdb1.gz) 81 Kb LPC: Ligand-Protein Contacts for 3VD8 CSU: Contacts of Structural Units for 3VD8 Structure Factors (265 Kb) Retrieve 3VD8 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3VD8 from S2C, [Save to disk] Re-refined 3vd8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3VD8 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3vd8] [3vd8_A] SWISS-PROT database: Domain found in 3VD8: [PYRIN ] by SMART

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