3VDZ date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand GD, SO4 enzyme
Primary referenceTailoring encodable lanthanide-binding tags as MRI contrast agents., Daughtry KD, Martin LJ, Sarraju A, Imperiali B, Allen KN, Chembiochem. 2012 Nov 26;13(17):2567-74. doi: 10.1002/cbic.201200448. Epub 2012, Nov 13. PMID:23150430
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (3vdz.pdb1.gz) 19 Kb
  • Biological Unit Coordinates (3vdz.pdb2.gz) 19 Kb
  • LPC: Ligand-Protein Contacts for 3VDZ
  • CSU: Contacts of Structural Units for 3VDZ
  • Structure Factors (222 Kb)
  • Retrieve 3VDZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VDZ from S2C, [Save to disk]
  • Re-refined 3vdz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3VDZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vdz] [3vdz_A] [3vdz_B]
  • SWISS-PROT database:
  • Domain found in 3VDZ: [UBQ ] by SMART

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