3VEY Transferase Transferase Inhibitor date Jan 09, 2012
title Glucokinase In Complex With Glucose And Atpgs
authors S.Liu
compound source
Molecule: Glucokinase
Chain: A
Fragment: Unp Residues 16-465
Synonym: Hexokinase Type Iv, Hk Iv, Hexokinase-4, Hk4, Hexo
Ec: 2.7.1.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gck
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 65 2 2
R_factor 0.214 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.387 80.387 324.334 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.25 Å
ligand 0H5, AGS, GLC, NA enzyme Transferase E.C.2.7.1.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceInsights into the mechanism of glucokinase activation: observation of multiple distinct protein conformations., Liu S, Ammirati MJ, Song X, Knafels JD, Zhang J, Greasley SE, Pfefferkorn JA, Qiu X, J Biol Chem. 2012 Feb 1. PMID:22298776
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (157 Kb) [Save to disk]
  • Biological Unit Coordinates (3vey.pdb1.gz) 151 Kb
  • LPC: Ligand-Protein Contacts for 3VEY
  • CSU: Contacts of Structural Units for 3VEY
  • Structure Factors (538 Kb)
  • Retrieve 3VEY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VEY from S2C, [Save to disk]
  • Re-refined 3vey structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3VEY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3VEY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3VEY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vey_A] [3vey]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3VEY
  • Community annotation for 3VEY at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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