3VHU	Transcription Inhibitor	date	Sep 07, 2011
title	Mineralocorticoid Receptor Ligand-Binding Domain With Spiron
authors	S.Sogabe, N.Habuka
compound		source
Molecule: Mineralocorticoid Receptor Chain: A Fragment: Ligand-Binding Domain, Unp Residues 712-984 Synonym: Mr, Nuclear Receptor Subfamily 3 Group C Member 2 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nr3c2, Mcr, Mlr Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid
symmetry	Space Group: C 2 2 21	R_factor 0.190 R_Free 0.246
crystal cell	length a length b length c angle alpha angle beta angle gamma 91.526 171.509 42.358 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.11 Å
ligand	SNL BindingDB	enzyme
Primary reference	Identification of Benzoxazin-3-one Derivatives as Novel, Potent, and Selective Nonsteroidal Mineralocorticoid Receptor Antagonists., Hasui T, Matsunaga N, Ora T, Ohyabu N, Nishigaki N, Imura Y, Igata Y, Matsui H, Motoyaji T, Tanaka T, Habuka N, Sogabe S, Ono M, Siedem CS, Tang TP, Gauthier C, De Meese LA, Boyd SA, Fukumoto S, J Med Chem. 2011 Dec 22;54(24):8616-31. Epub 2011 Nov 29. PMID:22074142

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk] Biological Unit Coordinates (3vhu.pdb1.gz) 88 Kb LPC: Ligand-Protein Contacts for 3VHU CSU: Contacts of Structural Units for 3VHU Structure Factors (288 Kb) Retrieve 3VHU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3VHU from S2C, [Save to disk] Re-refined 3vhu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3VHU in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3VHU

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3VHU, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3vhu_A] [3vhu] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3VHU: [HOLI ] by SMART

Other resources with information on 3VHU

Community annotation for 3VHU at PDBWiki (http://pdbwiki.org)

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