3VKI Chaperone date Nov 16, 2011
title Monoclinic Crystal Structure Of Salmonella Flga In Closed Fo
authors H.Matsunami, F.A.Samatey, K.Namba
compound source
Molecule: Flagella Basal Body P-Ring Formation Protein Flga
Chain: A, B, C, D
Synonym: Flagellar Flga Protein
Engineered: Yes
Organism_scientific: Salmonella Typhimurium
Organism_taxid: 90371
Strain: Sjw1103
Gene: Flga
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet22b
symmetry Space Group: P 1 21 1
R_factor 0.251 R_Free 0.281
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.926 103.317 85.501 90.00 107.26 90.00
method X-Ray Diffractionresolution 2.30 Å
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural flexibility of the periplasmic protein, FlgA, regulates flagellar P-ring assembly in Salmonella enterica., Matsunami H, Yoon YH, Meshcheryakov VA, Namba K, Samatey FA, Sci Rep. 2016 Jun 7;6:27399. doi: 10.1038/srep27399. PMID:27273476
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (132 Kb) [Save to disk]
  • Biological Unit Coordinates (3vki.pdb1.gz) 33 Kb
  • Biological Unit Coordinates (3vki.pdb2.gz) 33 Kb
  • Biological Unit Coordinates (3vki.pdb3.gz) 33 Kb
  • Biological Unit Coordinates (3vki.pdb4.gz) 34 Kb
  • CSU: Contacts of Structural Units for 3VKI
  • Structure Factors (2126 Kb)
  • Retrieve 3VKI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VKI from S2C, [Save to disk]
  • Re-refined 3vki structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3VKI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3VKI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3VKI, from MSDmotif at EBI
  • Fold representative 3vki from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vki_B] [3vki_C] [3vki_D] [3vki_A] [3vki]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3VKI: [SAF ] by SMART
  • Other resources with information on 3VKI
  • Community annotation for 3VKI at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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