3VLZ Oxidoreductase date Dec 05, 2011
title Assimilatory Nitrite Reductase (Nii3) - N226k Mutant - So3 F Complex From Tobacco Leaf
authors S.Nakano, M.Takahashi, A.Sakamoto, H.Morikawa, K.Katayanagi
compound source
Molecule: Nitrite Reductase
Chain: A
Fragment: Unp Residues 19-580
Ec: 1.7.7.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Nicotiana Tabacum
Organism_common: Tobacco
Organism_taxid: 4097
Gene: Nii3
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet16b
symmetry Space Group: P 4 21 2
R_factor 0.223 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
132.889 132.889 77.646 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.07 Å
ligand CL, K, SF4, SO3, SRM enzyme Oxidoreductase E.C.1.7.7.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceX-ray crystal structure of a mutant assimilatory nitrite reductase that shows sulfite reductase-like activity., Nakano S, Takahashi M, Sakamoto A, Morikawa H, Katayanagi K, Chem Biodivers. 2012 Sep;9(9):1989-99. doi: 10.1002/cbdv.201100442. PMID:22976986
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (106 Kb) [Save to disk]
  • Biological Unit Coordinates (3vlz.pdb1.gz) 100 Kb
  • LPC: Ligand-Protein Contacts for 3VLZ
  • CSU: Contacts of Structural Units for 3VLZ
  • Structure Factors (635 Kb)
  • Retrieve 3VLZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VLZ from S2C, [Save to disk]
  • Re-refined 3vlz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3VLZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3VLZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3VLZ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vlz_A] [3vlz]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3VLZ
  • Community annotation for 3VLZ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science