3VP3 Hydrolase Hydrolase Inhibitor date Feb 23, 2012
title Crystal Structure Of Human Glutaminase In Complex With Inhib
authors K.Thangavelu, J.Sivaraman
compound source
Molecule: Glutaminase Kidney Isoform, Mitochondrial
Chain: A
Fragment: Unp Residues 221-533
Synonym: Gls, K-Glutaminase, L-Glutamine Amidohydrolase
Ec: 3.5.1.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gls, Gls1, Kiaa0838
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 41 2 2
R_factor 0.195 R_Free 0.215
crystal
cell
length a length b length c angle alpha angle beta angle gamma
139.825 139.825 158.043 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand BP8, SO4 enzyme Hydrolase E.C.3.5.1.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for the allosteric inhibitory mechanism of human kidney-type glutaminase (KGA) and its regulation by Raf-Mek-Erk signaling in cancer cell metabolism., Thangavelu K, Pan CQ, Karlberg T, Balaji G, Uttamchandani M, Suresh V, Schuler H, Low BC, Sivaraman J, Proc Natl Acad Sci U S A. 2012 May 15;109(20):7705-10. Epub 2012 Apr 26. PMID:22538822
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (3vp3.pdb1.gz) 193 Kb
  • LPC: Ligand-Protein Contacts for 3VP3
  • CSU: Contacts of Structural Units for 3VP3
  • Structure Factors (144 Kb)
  • Retrieve 3VP3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VP3 from S2C, [Save to disk]
  • Re-refined 3vp3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3VP3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3VP3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3VP3, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vp3_A] [3vp3]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3VP3
  • Community annotation for 3VP3 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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