3VQ9	Transferase Transferase Inhibitor	date	Mar 20, 2012
title	Hiv-1 In Core Domain In Complex With 6-Fluoro-1,3-Benzothiaz
authors	J.Wielens, D.K.Chalmers, M.W.Parker, M.J.Scanlon
compound		source
Molecule: Pol Polyprotein Chain: A, B, C Fragment: Integrase Core Domain, Unp Residues 765-925 Engineered: Yes Mutation: Yes		Organism_scientific: Human Immunodeficiency Virus 1 Organism_taxid: 11676 Strain: Nl43 Gene: Pol Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet23b+
symmetry	Space Group: C 1 2 1	R_factor 0.196 R_Free 0.232
crystal cell	length a length b length c angle alpha angle beta angle gamma 99.327 72.909 79.851 90.00 108.60 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	FBB	enzyme
Gene Ontology	Chain Function Process Component A, C, B
Primary reference	Parallel Screening of Low Molecular Weight Fragment Libraries: Do Differences in Methodology Affect Hit Identification?, Wielens J, Headey SJ, Rhodes DI, Mulder RJ, Dolezal O, Deadman JJ, Newman J, Chalmers DK, Parker MW, Peat TS, Scanlon MJ, J Biomol Screen. 2012 Nov 13. PMID:23139382

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (77 Kb) [Save to disk] Biological Unit Coordinates (3vq9.pdb1.gz) 48 Kb Biological Unit Coordinates (3vq9.pdb2.gz) 53 Kb LPC: Ligand-Protein Contacts for 3VQ9 CSU: Contacts of Structural Units for 3VQ9 Structure Factors (605 Kb) Retrieve 3VQ9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3VQ9 from S2C, [Save to disk] Re-refined 3vq9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3VQ9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3VQ9

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3VQ9, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3vq9_A] [3vq9_C] [3vq9] [3vq9_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3VQ9

Community annotation for 3VQ9 at PDBWiki (http://pdbwiki.org)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---