3VQC	Transferase Transferase Inhibitor	date	Mar 21, 2012
title	Hiv-1 In Core Domain In Complex With (5-Methyl-3-Phenyl-1,2- Yl)Methanol
authors	J.Wielens, D.K.Chalmers, M.W.Parker, M.J.Scanlon
compound		source
Molecule: Pol Polyprotein Chain: A, B Fragment: Integrase Core Domain, Unp Residues 770-927 Engineered: Yes Mutation: Yes		Organism_scientific: Human Immunodeficiency Virus 1 Organism_taxid: 11676 Strain: Nl43 Gene: Pol Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet23b+
symmetry	Space Group: P 21 21 21	R_factor 0.219 R_Free 0.266
crystal cell	length a length b length c angle alpha angle beta angle gamma 60.110 59.920 81.590 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.30 Å
ligand	CD, MPK, SO4	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Parallel Screening of Low Molecular Weight Fragment Libraries: Do Differences in Methodology Affect Hit Identification?, Wielens J, Headey SJ, Rhodes DI, Mulder RJ, Dolezal O, Deadman JJ, Newman J, Chalmers DK, Parker MW, Peat TS, Scanlon MJ, J Biomol Screen. 2012 Nov 13. PMID:23139382

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk] Biological Unit Coordinates (3vqc.pdb1.gz) 45 Kb LPC: Ligand-Protein Contacts for 3VQC CSU: Contacts of Structural Units for 3VQC Structure Factors (189 Kb) Retrieve 3VQC in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3VQC from S2C, [Save to disk] Re-refined 3vqc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3VQC in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3VQC

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3VQC, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3vqc_B] [3vqc] [3vqc_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3VQC

Community annotation for 3VQC at PDBWiki (http://pdbwiki.org)

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