OCA Atlas for 3VS5

3VS5

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

CA, PTR, VSG

enzyme

Gene
Ontology

Chain	Function	Process	Component
B, A

Primary reference

A Pyrrolo-Pyrimidine Derivative Targets Human Primary AML Stem Cells in Vivo., Saito Y, Yuki H, Kuratani M, Hashizume Y, Takagi S, Honma T, Tanaka A, Shirouzu M, Mikuni J, Handa N, Ogahara I, Sone A, Najima Y, Tomabechi Y, Wakiyama M, Uchida N, Tomizawa-Murasawa M, Kaneko A, Tanaka S, Suzuki N, Kajita H, Aoki Y, Ohara O, Shultz LD, Fukami T, Goto T, Taniguchi S, Yokoyama S, Ishikawa F, Sci Transl Med. 2013 Apr 17;5(181):181ra52. doi: 10.1126/scitranslmed.3004387. PMID:23596204

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (147 Kb) [Save to disk]

Biological Unit Coordinates (3vs5.pdb1.gz) 72 Kb

Biological Unit Coordinates (3vs5.pdb2.gz) 72 Kb

LPC: Ligand-Protein Contacts for 3VS5

CSU: Contacts of Structural Units for 3VS5

Structure Factors (450 Kb)

Retrieve 3VS5 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3VS5 from S2C, [Save to disk]

Re-refined 3vs5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3VS5 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3vs5] [3vs5_A] [3vs5_B]

SWISS-PROT database:

Domains found in 3VS5: [SH2] [SH3] [TyrKc ] by SMART

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