3VSX Hydrolase Hydrolase Inhibitor date May 11, 2012
title Human Renin In Complex With Compound 18
authors M.Takahashi, H.Hanzawa
compound source
Molecule: Renin
Chain: A, B
Synonym: Angiotensinogenase
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ren
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: 293f
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcdna3.1
symmetry Space Group: P 21 3
R_factor 0.237 R_Free 0.301
length a length b length c angle alpha angle beta angle gamma
138.188 138.188 138.188 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
ligand NAG, R32 enzyme Hydrolase E.C. BRENDA
A, B

Primary referenceDesign and optimization of novel (2S,4S,5S)-5-amino-6-(2,2-dimethyl-5-oxo-4-phenylpiperazin-1-yl)-4-hydroxy-2-isop ropylhexanamides as renin inhibitors., Nakamura Y, Sugita C, Meguro M, Miyazaki S, Tamaki K, Takahashi M, Nagai Y, Nagayama T, Kato M, Suemune H, Nishi T, Bioorg Med Chem Lett. 2012 Jul 15;22(14):4561-6. Epub 2012 Jun 4. PMID:22726934
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (112 Kb) [Save to disk]
  • Biological Unit Coordinates (3vsx.pdb1.gz) 54 Kb
  • Biological Unit Coordinates (3vsx.pdb2.gz) 55 Kb
  • Biological Unit Coordinates (3vsx.pdb3.gz) 313 Kb
  • LPC: Ligand-Protein Contacts for 3VSX
  • CSU: Contacts of Structural Units for 3VSX
  • Structure Factors (179 Kb)
  • Retrieve 3VSX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VSX from S2C, [Save to disk]
  • Re-refined 3vsx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3VSX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3VSX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3VSX, from MSDmotif at EBI
  • Fold representative 3vsx from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vsx] [3vsx_A] [3vsx_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3VSX
  • Community annotation for 3VSX at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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