3VTU	Protein Binding	date	Jun 08, 2012
title	Crystal Structure Of Human Lc3b_2-119
authors	H.Suzuki, M.Kawasaki, R.Kato, S.Wakatsuki
compound		source
Molecule: Microtubule-Associated Proteins 1a1b Light Chain Chain: A Fragment: Unp Residues 2-119 Synonym: Autophagy-Related Protein Lc3 B, Autophagy-Related Ubiquitin-Like Modifier Lc3 B, Map1 Light Chain 3-Like Prot Map1amap1b Light Chain 3 B, Map1amap1b Lc3 B, Microtubule Associated Protein 1 Light Chain 3 Beta; Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Map1lc3b, Map1alc3 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-4t-1
symmetry	Space Group: P 21 21 21	R_factor 0.181 R_Free 0.231
crystal cell	length a length b length c angle alpha angle beta angle gamma 34.680 53.550 61.020 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.60 Å
ligand	SO4	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structural basis for phosphorylation-triggered autophagic clearance of Salmonella., Rogov VV, Suzuki H, Fiskin E, Wild P, Kniss A, Rozenknop A, Kato R, Kawasaki M, McEwan DG, Lohr F, Guntert P, Dikic I, Wakatsuki S, Dotsch V, Biochem J. 2013 Jun 28. PMID:23805866

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk] Biological Unit Coordinates (3vtu.pdb1.gz) 46 Kb LPC: Ligand-Protein Contacts for 3VTU CSU: Contacts of Structural Units for 3VTU Structure Factors (210 Kb) Retrieve 3VTU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3VTU from S2C, [Save to disk] Re-refined 3vtu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3VTU in 3D

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Visual 3D analysis of 3VTU

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 3VTU, from MSDmotif at EBI Fold representative 3vtu from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3vtu_A] [3vtu] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3VTU

Community annotation for 3VTU at PDBWiki (http://pdbwiki.org)

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