3VTV Crystal structure of Optineurin LIR-fused human LC3B_2-119 date
authors Suzuki, H., Kawasaki, M., Kato, R., Wakatsuki, S.
compound source
symmetry
R_factor
R_Free 0.25168
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.70
ligand SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for phosphorylation-triggered autophagic clearance of Salmonella., Rogov VV, Suzuki H, Fiskin E, Wild P, Kniss A, Rozenknop A, Kato R, Kawasaki M, McEwan DG, Lohr F, Guntert P, Dikic I, Wakatsuki S, Dotsch V, Biochem J. 2013 Jun 28. PMID:23805866
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (3vtv.pdb1.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 3VTV
  • CSU: Contacts of Structural Units for 3VTV
  • Structure Factors (182 Kb)
  • Retrieve 3VTV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VTV from S2C, [Save to disk]
  • Re-refined 3vtv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3VTV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3VTV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3VTV, from MSDmotif at EBI
  • Fold representative 3vtv from FSSP and Dali (Families of Structurally Similar Proteins)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vtv_A] [3vtv]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3VTV
  • Community annotation for 3VTV at PDBWiki (http://pdbwiki.org)

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