3VTV	Protein Binding	date	Jun 08, 2012
title	Crystal Structure Of Optineurin Lir-Fused Human Lc3b_2-119
authors	H.Suzuki, M.Kawasaki, R.Kato, S.Wakatsuki
compound		source
Molecule: Optineurin, Microtubule-Associated Proteins 1a1b Chain 3b; Chain: A Fragment: Unp Residues 170-181, Residues 2-119 Synonym: Autophagy-Related Protein Lc3 B, Autophagy-Related Ubiquitin-Like Modifier Lc3 B, Map1 Light Chain 3-Like Prot Map1amap1b Light Chain 3 B, Map1amap1b Lc3 B, Microtubule Associated Protein 1 Light Chain 3 Beta; Engineered: Yes Mutation: Yes Other_details: The Fusion Protein Of Optineurin Lir (Residu 181) And Microtubule-Associated Proteins 1a1b Light Chain (Residues 2-119)		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Map1lc3b, Map1alc3 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pgex-4t-1
symmetry	Space Group: P 21 21 21	R_factor 0.192 R_Free 0.252
crystal cell	length a length b length c angle alpha angle beta angle gamma 35.200 53.000 60.960 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	SO4	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Structural basis for phosphorylation-triggered autophagic clearance of Salmonella., Rogov VV, Suzuki H, Fiskin E, Wild P, Kniss A, Rozenknop A, Kato R, Kawasaki M, McEwan DG, Lohr F, Guntert P, Dikic I, Wakatsuki S, Dotsch V, Biochem J. 2013 Jun 28. PMID:23805866

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk] Biological Unit Coordinates (3vtv.pdb1.gz) 46 Kb LPC: Ligand-Protein Contacts for 3VTV CSU: Contacts of Structural Units for 3VTV Structure Factors (182 Kb) Retrieve 3VTV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3VTV from S2C, [Save to disk] Re-refined 3vtv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3VTV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3VTV

Cartoon representation from PDB Cartoon Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute Crystal Contacts, from CryCo at Weizmann Institute 3D motif for 3VTV, from MSDmotif at EBI Fold representative 3vtv from FSSP and Dali (Families of Structurally Similar Proteins)

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3vtv_A] [3vtv] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3VTV

Community annotation for 3VTV at PDBWiki (http://pdbwiki.org)

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