3VUC Hydrolase Hydrolase Inhibitor date Jun 26, 2012
title Human Renin In Complex With Compound 5
authors M.Takahashi, Y.Matsui, H.Hanzawa
compound source
Molecule: Renin
Chain: A, B
Synonym: Angiotensinogenase
Ec: 3.4.23.15
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ren
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: 293f
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcdna3.1
symmetry Space Group: P 21 3
R_factor 0.184 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
141.289 141.289 141.289 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand HHE, NAG enzyme Hydrolase E.C.3.4.23.15 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (224 Kb) [Save to disk]
  • Biological Unit Coordinates (3vuc.pdb1.gz) 110 Kb
  • Biological Unit Coordinates (3vuc.pdb2.gz) 111 Kb
  • Biological Unit Coordinates (3vuc.pdb3.gz) 647 Kb
  • LPC: Ligand-Protein Contacts for 3VUC
  • CSU: Contacts of Structural Units for 3VUC
  • Structure Factors (966 Kb)
  • Retrieve 3VUC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VUC from S2C, [Save to disk]
  • Re-refined 3vuc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3VUC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3VUC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3VUC, from MSDmotif at EBI
  • Fold representative 3vuc from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vuc_A] [3vuc] [3vuc_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3VUC
  • Community annotation for 3VUC at PDBWiki (http://pdbwiki.org)

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