3VUM	Transferase Transferase Inhibitor	date	Jul 02, 2012
title	Crystal Structure Of A Cysteine-Deficient Mutant M7 In Map K
authors	T.Nakaniwa, T.Kinoshita, T.Inoue
compound		source
Molecule: Mitogen-Activated Protein Kinase 8 Chain: A Fragment: Kinase Domain, Unp Residues 1-364 Synonym: Mitogen-Activated Protein Kinase 8 Isoform Jnk1 Be Mitogen-Activated Protein Kinase 8, Isoform Cra_d, Cdna Flj Highly Similar To Homo Sapiens Mitogen-Activated Protein Ki (Mapk8), Transcript Variant 4, Mrna; Ec: 2.7.11.24 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet24a
Molecule: Peptide From C-Jun-Amino-Terminal Kinase-Interact Protein 1; Chain: F Synonym: Jip-1, Jnk-Interacting Protein 1, Islet-Brain 1, I Map Kinase Scaffold Protein 1, Mitogen-Activated Protein Ki Interacting Protein 1; Engineered: Yes		Synthetic: Yes Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 63 2 2	R_factor 0.188 R_Free 0.255
crystal cell	length a length b length c angle alpha angle beta angle gamma 161.883 161.883 87.974 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.69 Å
ligand	SO4, TRS	enzyme	Transferase E.C.2.7.11.24 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Seven cysteine-deficient mutants depict the interplay between thermal and chemical stabilities of individual cysteine residues in mitogen-activated protein kinase c-Jun N-terminal kinase 1., Nakaniwa T, Fukada H, Inoue T, Gouda M, Nakai R, Kirii Y, Adachi M, Tamada T, Segawa S, Kuroki R, Tada T, Kinoshita T, Biochemistry. 2012 Oct 23;51(42):8410-21. doi: 10.1021/bi300918w. Epub 2012 Oct, 11. PMID:23020677

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk] Biological Unit Coordinates (3vum.pdb1.gz) 62 Kb LPC: Ligand-Protein Contacts for 3VUM CSU: Contacts of Structural Units for 3VUM Structure Factors (277 Kb) Retrieve 3VUM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3VUM from S2C, [Save to disk] Re-refined 3vum structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3VUM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3VUM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3VUM, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3vum_A] [3vum] [3vum_F] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3VUM: [S_TKc ] by SMART

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