3VV6	Hydrolase Hydrolase Inhibitor	date	Jul 17, 2012
title	Crystal Structure Of Beta Secetase In Complex With 2-Amino-3 ((1s, 2r)-2-Phenylcyclopropyl)Pyrimidin-4(3h)-One
authors	S.Yonezawa, T.Yamamoto, H.Yamakawa, C.Muto, M.Hosono, K.Hattori, K.Higashino, M.Sakagami, H.Togame, Y.Tanaka, T.Nakano, H.Takemot M.Arisawa, S.Shuto
compound		source
Molecule: Beta-Secretase 1 Chain: A Fragment: Unp Residues 43-454 Synonym: Aspartyl Protease 2, Asp2, Asp 2, Beta-Site Amyloi Precursor Protein Cleaving Enzyme 1, Beta-Site App Cleaving Memapsin-2, Membrane-Associated Aspartic Protease 2; Ec: 3.4.23.46 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Bace1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
symmetry	Space Group: P 61 2 2	R_factor 0.249 R_Free 0.280
crystal cell	length a length b length c angle alpha angle beta angle gamma 102.491 102.491 170.156 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.05 Å
ligand	B00, GOL, IOD BindingDB	enzyme	Hydrolase E.C.3.4.23.46 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Conformational Restriction Approach to beta-Secretase (BACE1) Inhibitors: Effect of a Cyclopropane Ring To Induce an Alternative Binding Mode., Yonezawa S, Yamamoto T, Yamakawa H, Muto C, Hosono M, Hattori K, Higashino K, Yutsudo T, Iwamoto H, Kondo Y, Sakagami M, Togame H, Tanaka Y, Nakano T, Takemoto H, Arisawa M, Shuto S, J Med Chem. 2012 Oct 8. PMID:22998419

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk] Biological Unit Coordinates (3vv6.pdb1.gz) 63 Kb LPC: Ligand-Protein Contacts for 3VV6 CSU: Contacts of Structural Units for 3VV6 Structure Factors (520 Kb) Retrieve 3VV6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3VV6 from S2C, [Save to disk] Re-refined 3vv6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3VV6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3VV6

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3VV6, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3vv6] [3vv6_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3VV6

Community annotation for 3VV6 at PDBWiki (http://pdbwiki.org)

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