3VY9 Membrane Protein date Sep 21, 2012
title Crystal Structure Of Porb From Neisseria Meningitidis In Com Cesium Ion, Space Group H32
authors C.Kattner, J.Zaucha, F.Jaenecke, U.Zachariae, M.Tanabe
compound source
Molecule: Outer Membrane Protein
Chain: X
Engineered: Yes
 Organism_scientific: Neisseria Meningitidis
Organism_taxid: 487
Strain: W135
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21b
symmetry Space Group: H 3 2
R_factor 0.235 R_Free 0.281
crystal
cell
length a length b length c angle alpha angle beta angle gamma
144.208 144.208 106.411 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.63 Å
ligand CS enzyme
Gene
Ontology
ChainFunctionProcessComponent
X


Primary referenceIdentification of a cation transport pathway in Neisseria meningitidis PorB., Kattner C, Zaucha J, Jaenecke F, Zachariae U, Tanabe M, Proteins. 2012 Dec 19. doi: 10.1002/prot.24241. PMID:23255122
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (3vy9.pdb1.gz) 54 Kb
  • Biological Unit Coordinates (3vy9.pdb2.gz) 157 Kb
  • LPC: Ligand-Protein Contacts for 3VY9
  • CSU: Contacts of Structural Units for 3VY9
  • Structure Factors (194 Kb)
  • Retrieve 3VY9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3VY9 from S2C, [Save to disk]
  • Re-refined 3vy9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3VY9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3VY9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3VY9, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3vy9_X] [3vy9]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3VY9
  • Community annotation for 3VY9 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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