3VYD		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	NAG, VYD BindingDB	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	Design and discovery of new (3S,5R)-5-[4-(2-chlorophenyl)-2,2-dimethyl-5-oxopiperazin-1-yl]piperidine-3-carbo xamides as potent renin inhibitors., Mori Y, Ogawa Y, Mochizuki A, Nakamura Y, Sugita C, Miyazaki S, Tamaki K, Matsui Y, Takahashi M, Nagayama T, Nagai Y, Inoue S, Nishi T, Bioorg Med Chem Lett. 2012 Dec 15;22(24):7677-82. doi:, 10.1016/j.bmcl.2012.09.103. Epub 2012 Oct 17. PMID:23122821

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (116 Kb) [Save to disk] Biological Unit Coordinates (3vyd.pdb1.gz) 57 Kb Biological Unit Coordinates (3vyd.pdb2.gz) 57 Kb Biological Unit Coordinates (3vyd.pdb3.gz) 324 Kb LPC: Ligand-Protein Contacts for 3VYD CSU: Contacts of Structural Units for 3VYD Structure Factors (922 Kb) Retrieve 3VYD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3VYD from S2C, [Save to disk] Re-refined 3vyd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3VYD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3vyd] [3vyd_A] [3vyd_B] SWISS-PROT database:

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