3VYE	Hydrolase Hydrolase Inhibitor	date	Sep 24, 2012
title	Human Renin In Complex With Inhibitor 7
authors	M.Takahashi, Y.Matsui, H.Hanzawa
compound		source
Molecule: Renin Chain: A, B Synonym: Angiotensinogenase Ec: 3.4.23.15 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ren Expression_system: Homo Sapiens Expression_system_common: Human Expression_system_taxid: 9606 Expression_system_cell_line: 293f Expression_system_vector_type: Plasmid Expression_system_plasmid: Pcdna3.1
symmetry	Space Group: P 21 3	R_factor 0.232 R_Free 0.277
crystal cell	length a length b length c angle alpha angle beta angle gamma 141.442 141.442 141.442 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.70 Å
ligand	NAG, VYE	enzyme	Hydrolase E.C.3.4.23.15 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Design and discovery of new (3S,5R)-5-[4-(2-chlorophenyl)-2,2-dimethyl-5-oxopiperazin-1-yl]piperidine-3-carbo xamides as potent renin inhibitors., Mori Y, Ogawa Y, Mochizuki A, Nakamura Y, Sugita C, Miyazaki S, Tamaki K, Matsui Y, Takahashi M, Nagayama T, Nagai Y, Inoue S, Nishi T, Bioorg Med Chem Lett. 2012 Dec 15;22(24):7677-82. doi:, 10.1016/j.bmcl.2012.09.103. Epub 2012 Oct 17. PMID:23122821

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (113 Kb) [Save to disk] Biological Unit Coordinates (3vye.pdb1.gz) 55 Kb Biological Unit Coordinates (3vye.pdb2.gz) 55 Kb Biological Unit Coordinates (3vye.pdb3.gz) 316 Kb LPC: Ligand-Protein Contacts for 3VYE CSU: Contacts of Structural Units for 3VYE Structure Factors (948 Kb) Retrieve 3VYE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3VYE from S2C, [Save to disk] Re-refined 3vye structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3VYE in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3VYE

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3VYE, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3vye] [3vye_B] [3vye_A] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3VYE

Community annotation for 3VYE at PDBWiki (http://pdbwiki.org)

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