3VZD		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	ADP, CL, MG, POP, UUL	enzyme
Gene Ontology	Chain Function Process Component C, F, A, E, B, D lipid kinase activity sphinganine kinase activity sphingosine-1-phosphate rece...
Primary reference	Molecular Basis of Sphingosine Kinase 1 Substrate Recognition and Catalysis., Wang Z, Min X, Xiao SH, Johnstone S, Romanow W, Meininger D, Xu H, Liu J, Dai J, An S, Thibault S, Walker N, Structure. 2013 Apr 16. pii: S0969-2126(13)00086-5. doi:, 10.1016/j.str.2013.02.025. PMID:23602659

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (340 Kb) [Save to disk] Biological Unit Coordinates (3vzd.pdb1.gz) 332 Kb Biological Unit Coordinates (3vzd.pdb2.gz) 333 Kb LPC: Ligand-Protein Contacts for 3VZD CSU: Contacts of Structural Units for 3VZD Structure Factors (1682 Kb) Retrieve 3VZD in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3VZD from S2C, [Save to disk] Re-refined 3vzd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3VZD in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3vzd] [3vzd_A] [3vzd_B] [3vzd_C] [3vzd_D] [3vzd_E] [3vzd_F] SWISS-PROT database: Domain found in 3VZD: [DAGKc ] by SMART

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