3W51 Transferase date Jan 18, 2013
title Tankyrase In Complex With 2-Hydroxy-4-Methylquinoline
authors A.E.Jansson, E.A.Larsson, P.L.Nordlund
compound source
Molecule: Tankyrase-2
Chain: A, B
Fragment: Unp Residues 952-1161
Synonym: Tank2, Adp-Ribosyltransferase Diphtheria Toxin-Lik Artd6, Poly [Adp-Ribose] Polymerase 5b, Tnks-2, Trf1-Intera Ankyrin-Related Adp-Ribose Polymerase 2, Tankyrase II, Tank Protein, Tankyrase-Related Protein;
Ec: 2.4.2.30
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Parp5b, Tank2, Tnkl, Tnks2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Escherichia Coli Bl21(De3) R3 Pra
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Bsa4
symmetry Space Group: C 2 2 21
R_factor 0.187 R_Free 0.243
crystal
cell
length a length b length c angle alpha angle beta angle gamma
94.276 95.038 116.497 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand AJ2, SO4, ZN enzyme Transferase E.C.2.4.2.30 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceFragment-based ligand design of novel potent inhibitors of tankyrases., Larsson EA, Jansson A, Ng FM, Then SW, Panicker R, Liu B, Sangthongpitag K, Pendharkar V, Tai SJ, Hill J, Dan C, Ho SY, Cheong WW, Poulsen A, Blanchard S, Lin GR, Alam J, Keller TH, Nordlund P, J Med Chem. 2013 Jun 13;56(11):4497-508. doi: 10.1021/jm400211f. Epub 2013 Jun 4. PMID:23672613
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • Biological Unit Coordinates (3w51.pdb1.gz) 38 Kb
  • Biological Unit Coordinates (3w51.pdb2.gz) 38 Kb
  • LPC: Ligand-Protein Contacts for 3W51
  • CSU: Contacts of Structural Units for 3W51
  • Structure Factors (521 Kb)
  • Retrieve 3W51 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3W51 from S2C, [Save to disk]
  • Re-refined 3w51 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3W51 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3W51
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3W51, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3w51] [3w51_B] [3w51_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3W51
  • Community annotation for 3W51 at PDBWiki (http://pdbwiki.org)

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