3W59 Sugar Binding Protein date Jan 26, 2013
title Crystal Structure Of Galectin-1 In The Lactose-Unbound State
authors H.Saburi, T.Tanaka, N.Kunishima
compound source
Molecule: Galectin-1
Chain: A, B, C, D
Synonym: Gal-1, 14 Kda Laminin-Binding Protein, Hlbp14, 14 Lectin, Beta-Galactoside-Binding Lectin L-14-I, Galaptin, H Lactose-Binding Lectin 1, Lectin Galactoside-Binding Solubl Putative Mapk-Activating Protein Pm12, S-Lac Lectin 1;
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Lgals1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.212 R_Free 0.231
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.140 111.557 117.192 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand BME, GOL, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk]
  • Biological Unit Coordinates (3w59.pdb1.gz) 45 Kb
  • Biological Unit Coordinates (3w59.pdb2.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 3W59
  • CSU: Contacts of Structural Units for 3W59
  • Structure Factors (388 Kb)
  • Retrieve 3W59 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3W59 from S2C, [Save to disk]
  • Re-refined 3w59 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3W59 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3W59
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3W59, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3w59_B] [3w59_C] [3w59_D] [3w59_A] [3w59]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3W59: [GLECT] [Gal-bind_lectin ] by SMART
    • Other resources with information on 3W59
  • Community annotation for 3W59 at PDBWiki (http://pdbwiki.org)

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