3W7F Crystal structure of the C(30) carotenoid dehydrosqualene synthase from staphylococcus aureus complexed with farnesyl thiopyrophosphate date 2013-02-28
authors Liu, C.I., Jeng, W.Y., Wang, A.H., Oldfield, E.
compound source
symmetry
R_factor
R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.25
ligand FPS, MG enzyme
note 3W7F supersedes 2ZCP
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA cholesterol biosynthesis inhibitor blocks Staphylococcus aureus virulence., Liu CI, Liu GY, Song Y, Yin F, Hensler ME, Jeng WY, Nizet V, Wang AH, Oldfield E, Science. 2008 Mar 7;319(5868):1391-4. Epub 2008 Feb 14. PMID:18276850
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (114 Kb) [Save to disk]
  • Biological Unit Coordinates (3w7f.pdb1.gz) 55 Kb
  • Biological Unit Coordinates (3w7f.pdb2.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 3W7F
  • CSU: Contacts of Structural Units for 3W7F
  • Structure Factors (373 Kb)
  • Retrieve 3W7F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3W7F from S2C, [Save to disk]
  • Re-refined 3w7f structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3W7F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3W7F
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3W7F, from MSDmotif at EBI
  • Fold representative 3w7f from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3w7f] [3w7f_B] [3w7f_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3W7F
  • Community annotation for 3W7F at PDBWiki (http://pdbwiki.org)

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