3W9A	Hydrolase	date	Apr 01, 2013
title	Crystal Structure Of The Catalytic Domain Of The Glycoside H Family 131 Protein From Coprinopsis Cinerea
authors	T.Miyazaki, Y.Tanaka, M.Tamura, M.Yoshida, A.Nishikawa, T.Tonozuk
compound		source
Molecule: Putative Uncharacterized Protein Chain: A, B, C, D Fragment: Catalytic Domain, Unp Residues 19-252 Synonym: Ccgh131a Engineered: Yes		Organism_scientific: Coprinopsis Cinerea Organism_common: Inky Cap Fungus Organism_taxid: 240176 Strain: Okayama-7 Gene: Cc1g_07166 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21a
symmetry	Space Group: P 1	R_factor 0.188 R_Free 0.236
crystal cell	length a length b length c angle alpha angle beta angle gamma 59.200 68.421 69.168 89.99 72.87 85.81
method	X-Ray Diffraction	resolution	1.99 Å
ligand	GOL, MSE	enzyme
Gene	CC1G
Primary reference	Crystal structure of the N-terminal domain of a glycoside hydrolase family 131 protein from Coprinopsis cinerea., Miyazaki T, Yoshida M, Tamura M, Tanaka Y, Umezawa K, Nishikawa A, Tonozuka T, FEBS Lett. 2013 Jul 11;587(14):2193-8. doi: 10.1016/j.febslet.2013.05.041. Epub, 2013 May 24. PMID:23711369

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (173 Kb) [Save to disk] Biological Unit Coordinates (3w9a.pdb1.gz) 44 Kb Biological Unit Coordinates (3w9a.pdb2.gz) 44 Kb Biological Unit Coordinates (3w9a.pdb3.gz) 44 Kb Biological Unit Coordinates (3w9a.pdb4.gz) 44 Kb LPC: Ligand-Protein Contacts for 3W9A CSU: Contacts of Structural Units for 3W9A Structure Factors (856 Kb) Retrieve 3W9A in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3W9A from S2C, [Save to disk] Re-refined 3w9a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3W9A in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3W9A

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3W9A, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3w9a] [3w9a_B] [3w9a_C] [3w9a_A] [3w9a_D] SWISS-PROT database: Domain organization of by SWISSPFAM

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