3WBD date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand FLC, SIA enzyme
Primary referenceCrystal structure of anti-polysialic acid antibody single chain Fv fragment complexed with octasialic acid: insight into the binding preference for polysialic acid., Nagae M, Ikeda A, Hane M, Hanashima S, Kitajima K, Sato C, Yamaguchi Y, J Biol Chem. 2013 Nov 22;288(47):33784-96. doi: 10.1074/jbc.M113.496224. Epub, 2013 Oct 7. PMID:24100042
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (3wbd.pdb1.gz) 39 Kb
  • Biological Unit Coordinates (3wbd.pdb2.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 3WBD
  • CSU: Contacts of Structural Units for 3WBD
  • Structure Factors (2228 Kb)
  • Retrieve 3WBD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3WBD from S2C, [Save to disk]
  • Re-refined 3wbd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3WBD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3wbd] [3wbd_A] [3wbd_B]
  • SWISS-PROT database:
  • Domain found in 3WBD: [IGv ] by SMART

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