3WC9	Transferase	date	May 26, 2013
title	The Complex Structure Of Hssqs Wtih Ligand, Fspp
authors	N.Shang, Q.Li, T.P.Ko, H.C.Chan, C.H.Huang, F.Ren, Y.Zheng, Z.Zhu, C R.T.Guo
compound		source
Molecule: Squalene Synthase Chain: A, B, C, D, E, F Fragment: Unp Residues 31-370 Synonym: Sqs, Ss, Fpp, Fpp Farnesyltransferase, Farnesyl-Di Farnesyltransferase; Ec: 2.5.1.21 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Fdft1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3)Rp Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
symmetry	Space Group: P 1 21 1	R_factor 0.184 R_Free 0.248
crystal cell	length a length b length c angle alpha angle beta angle gamma 85.193 153.328 90.987 90.00 91.84 90.00
method	X-Ray Diffraction	resolution	2.82 Å
ligand	FPS	enzyme	Transferase E.C.2.5.1.21 BRENDA
Gene Ontology	Chain Function Process Component F, A, D, C, E, B
Primary reference	Squalene synthase as a target for Chagas disease therapeutics., Shang N, Li Q, Ko TP, Chan HC, Li J, Zheng Y, Huang CH, Ren F, Chen CC, Zhu Z, Galizzi M, Li ZH, Rodrigues-Poveda CA, Gonzalez-Pacanowska D, Veiga-Santos P, de Carvalho TM, de Souza W, Urbina JA, Wang AH, Docampo R, Li K, Liu YL, Oldfield E, Guo RT, PLoS Pathog. 2014 May 1;10(5):e1004114. doi: 10.1371/journal.ppat.1004114., eCollection 2014 May. PMID:24789335

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (346 Kb) [Save to disk] Biological Unit Coordinates (3wc9.pdb1.gz) 338 Kb Biological Unit Coordinates (3wc9.pdb2.gz) 173 Kb Biological Unit Coordinates (3wc9.pdb3.gz) 169 Kb LPC: Ligand-Protein Contacts for 3WC9 CSU: Contacts of Structural Units for 3WC9 Structure Factors (558 Kb) Retrieve 3WC9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3WC9 from S2C, [Save to disk] Re-refined 3wc9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3WC9 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3WC9

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3WC9, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3wc9] [3wc9_F] [3wc9_B] [3wc9_D] [3wc9_A] [3wc9_E] [3wc9_C] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3WC9

Community annotation for 3WC9 at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---