3WDU	Hydrolase	date	Jun 25, 2013
title	The Complex Structure Of Ptlic16a With Cellobiose
authors	Y.S.Cheng, C.H.Huang, C.C.Chen, T.Y.Huang, T.P.Ko, J.W.Huang, T.H. J.R.Liu, R.T.Guo
compound		source
Molecule: Beta-1,3-1,4-Glucanase Chain: A, B, C, D Fragment: Unp Residues 19-314 Synonym: Ptlic16a Ec: 3.2.1.73 Engineered: Yes		Organism_scientific: Paecilomyces Organism_common: Paecilomyces Thermophila Organism_taxid: 566408 Strain: J18 Expression_system: Komagataella Pastoris Expression_system_taxid: 4922 Expression_system_strain: X33 Expression_system_vector_type: Plasmid Expression_system_plasmid: Ppiczalphaa
symmetry	Space Group: C 2 2 21	R_factor 0.181 R_Free 0.213
crystal cell	length a length b length c angle alpha angle beta angle gamma 88.142 172.559 166.376 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.25 Å
ligand	BGC	enzyme	Hydrolase E.C.3.2.1.73 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Structural and mutagenetic analyses of a 1,3-1,4-beta-glucanase from Paecilomyces thermophila., Cheng YS, Huang CH, Chen CC, Huang TY, Ko TP, Huang JW, Wu TH, Liu JR, Guo RT, Biochim Biophys Acta. 2014 Feb;1844(2):366-73. doi: 10.1016/j.bbapap.2013.11.005., Epub 2013 Nov 18. PMID:24262091

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (207 Kb) [Save to disk] Biological Unit Coordinates (3wdu.pdb1.gz) 53 Kb Biological Unit Coordinates (3wdu.pdb2.gz) 53 Kb Biological Unit Coordinates (3wdu.pdb3.gz) 54 Kb Biological Unit Coordinates (3wdu.pdb4.gz) 52 Kb LPC: Ligand-Protein Contacts for 3WDU CSU: Contacts of Structural Units for 3WDU Structure Factors (575 Kb) Retrieve 3WDU in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3WDU from S2C, [Save to disk] Re-refined 3wdu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3WDU in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3WDU

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3WDU, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3wdu_A] [3wdu_B] [3wdu_C] [3wdu_D] [3wdu] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3WDU

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