3WMH	Transcription	date	Nov 19, 2013
title	Human Ppar Gamma Ligand Binding Domain In Complex With A Gam Selective Synthetic Partial Agonist Mekt75
authors	T.Oyama, M.Ohashi, H.Miyachi, M.Kusunoki
compound		source
Molecule: Peroxisome Proliferator-Activated Receptor Gamma Chain: A, B Fragment: Ligand Binding Domain, Unp Residues 223-504 Synonym: Ppar-Gamma, Nuclear Receptor Subfamily 1 Group C M Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Pparg Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
symmetry	Space Group: C 1 2 1	R_factor 0.215 R_Free 0.258
crystal cell	length a length b length c angle alpha angle beta angle gamma 93.249 61.113 119.280 90.00 103.11 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	JJA	enzyme
Gene Ontology	Chain Function Process Component A, B

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk] Biological Unit Coordinates (3wmh.pdb1.gz) 86 Kb LPC: Ligand-Protein Contacts for 3WMH CSU: Contacts of Structural Units for 3WMH Structure Factors (661 Kb) Retrieve 3WMH in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3WMH from S2C, [Save to disk] Re-refined 3wmh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3WMH in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3WMH

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3WMH, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3wmh] [3wmh_B] [3wmh_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3WMH: [HOLI ] by SMART

Other resources with information on 3WMH

Community annotation for 3WMH at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---