OCA Atlas for 3WV3

3WV3

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

CA, EDO, FMT, NA, WLL, ZN

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, B

Primary reference

Thieno[2,3-d]pyrimidine-2-carboxamides bearing a carboxybenzene group at 5-position: Highly potent, selective, and orally available MMP-13 inhibitors interacting with the S1'' binding site., Nara H, Sato K, Naito T, Mototani H, Oki H, Yamamoto Y, Kuno H, Santou T, Kanzaki N, Terauchi J, Uchikawa O, Kori M, Bioorg Med Chem. 2014 Oct 1;22(19):5487-505. doi: 10.1016/j.bmc.2014.07.025. Epub, 2014 Aug 7. PMID:25192810

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (123 Kb) [Save to disk]

Biological Unit Coordinates (3wv3.pdb1.gz) 60 Kb

Biological Unit Coordinates (3wv3.pdb2.gz) 58 Kb

Biological Unit Coordinates (3wv3.pdb3.gz) 116 Kb

LPC: Ligand-Protein Contacts for 3WV3

CSU: Contacts of Structural Units for 3WV3

Structure Factors (696 Kb)

Retrieve 3WV3 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3WV3 from S2C, [Save to disk]

Re-refined 3wv3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3WV3 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3wv3] [3wv3_A] [3wv3_B]

SWISS-PROT database:

Domain found in 3WV3: [ZnMc ] by SMART

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