3WVD Lyase date May 17, 2014
title Crystal Structure Of Nitrile Hydratase Mutant Br56k Complexe Trimethylacetonitrile, Photo-Activated For 50 Min
authors Y.Yamanaka, K.Hashimoto, K.Noguchi, M.Yohda, M.Odaka
compound source
Molecule: Nitrile Hydratase Subunit Alpha
Chain: A
Synonym: Nhase, Nitrilase
Ec: 4.2.1.84
Engineered: Yes
 Organism_scientific: Rhodococcus Erythropolis
Organism_taxid: 1833
Gene: Ntha
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Nitrile Hydratase Subunit Beta
Chain: B
Synonym: Nhase, Nitrilase
Ec: 4.2.1.84
Engineered: Yes
Mutation: Yes
Organism_scientific: Rhodococcus Erythropolis
Organism_taxid: 1833
Gene: Nthb, Nha2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.142 R_Free 0.163
crystal
cell
length a length b length c angle alpha angle beta angle gamma
114.084 59.965 81.720 90.00 125.05 90.00
method X-Ray Diffractionresolution 1.18 Å
ligand CSD, CSO, FE, MG, TAN enzyme Lyase E.C.4.2.1.84 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (153 Kb) [Save to disk]
  • Biological Unit Coordinates (3wvd.pdb1.gz) 147 Kb
  • LPC: Ligand-Protein Contacts for 3WVD
  • CSU: Contacts of Structural Units for 3WVD
  • Structure Factors (2661 Kb)
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  • Re-refined 3wvd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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    • Visual 3D analysis of 3WVD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3WVD, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3wvd_B] [3wvd] [3wvd_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3WVD
  • Community annotation for 3WVD at PDBWiki (http://pdbwiki.org)

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