3WWX Hydrolase date Jul 03, 2014
title Crystal Structure Of D-Stereospecific Amidohydrolase From St Sp. 82f2
authors J.Arima, S.Nagano, T.Hino, K.Shimone, Y.Isoda, N.Mori
compound source
Molecule: S12 Family Peptidase
Chain: A
Fragment: Unp Residues 34-382
Engineered: Yes
 Organism_scientific: Streptomyces Sp. 82f2
Organism_taxid: 690348
Gene: S12ap
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet22b
symmetry Space Group: P 21 21 21
R_factor 0.141 R_Free 0.162
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.290 74.681 76.447 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.49 Å
ligand DIA enzyme
Primary referenceCrystal structure of D-stereospecific amidohydrolase from Streptomyces sp. 82F2: insight into the structural factors for substrate specificity., Arima J, Shimone K, Miyatani K, Tsunehara Y, Isoda Y, Hino T, Nagano S, FEBS J. 2015 Oct 29. doi: 10.1111/febs.13579. PMID:26513520
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk]
  • Biological Unit Coordinates (3wwx.pdb1.gz) 104 Kb
  • LPC: Ligand-Protein Contacts for 3WWX
  • CSU: Contacts of Structural Units for 3WWX
  • Structure Factors (947 Kb)
  • Retrieve 3WWX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3WWX from S2C, [Save to disk]
  • Re-refined 3wwx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3WWX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3WWX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3wwx] [3wwx_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3WWX
  • Community annotation for 3WWX at PDBWiki (http://pdbwiki.org)

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