3X39 Electron Transport date Jan 16, 2015
title Domain-Swapped Dimer Of Pseudomonas Aeruginosa Cytochrome C5
authors S.Nagao, M.Ueda, H.Osuka, H.Komori, H.Kamikubo, M.Kataoka, Y.Higuc S.Hirota
compound source
Molecule: Cytochrome C-551
Chain: A, B
Fragment: Unp Residues 23-104
Synonym: Cytochrome C8,Cytochrome C551
Engineered: Yes
Organism_scientific: Pseudomonas Aeruginosa Pao1
Organism_taxid: 208964
Strain: Pao1
Gene: Nirm, Pa0518
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Jcb387
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pkk2332
symmetry Space Group: P 63 2 2
R_factor 0.139 R_Free 0.188
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.611 82.611 89.828 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.50 Å
ligand HEC enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • electron transfer activity


  • Primary referenceDomain-Swapped Dimer of Pseudomonas aeruginosa Cytochrome c551: Structural Insights into Domain Swapping of Cytochrome c Family Proteins., Nagao S, Ueda M, Osuka H, Komori H, Kamikubo H, Kataoka M, Higuchi Y, Hirota S, PLoS One. 2015 Apr 8;10(4):e0123653. doi: 10.1371/journal.pone.0123653., eCollection 2015. PMID:25853415
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (3x39.pdb1.gz) 62 Kb
  • Biological Unit Coordinates (3x39.pdb2.gz) 61 Kb
  • LPC: Ligand-Protein Contacts for 3X39
  • CSU: Contacts of Structural Units for 3X39
  • Structure Factors (543 Kb)
  • Retrieve 3X39 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3X39 from S2C, [Save to disk]
  • Re-refined 3x39 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3X39 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3X39
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3X39, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3x39] [3x39_B] [3x39_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3X39
  • Community annotation for 3X39 at PDBWiki (http://pdbwiki.org)

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