3ZC5	Transferase	date	Nov 15, 2012
title	X-Ray Structure Of C-Met Kinase In Complex With Inhibitor (S (1-Methyl-1h-Pyrazol-4-Yl)-(1,2,4)Triazolo(4,3-B)Pyridazin- Ethyl) Quinoline.
authors	M.Mctigue, N.Grodsky, K.Ryan
compound		source
Molecule: Hepatocyte Growth Factor Receptor Chain: A Fragment: Tyrosine Kinase Domain, Unp Residues 1051-1348 Synonym: Hgf Receptor, Hgfsf Receptor, Proto-Oncogene C-Me Factor Receptor, Sf Receptor, Tyrosine-Protein Kinase Met; Ec: 2.7.10.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus Expression_system_plasmid: Pfastbac1
symmetry	Space Group: P 21 21 2	R_factor 0.204 R_Free 0.256
crystal cell	length a length b length c angle alpha angle beta angle gamma 76.997 94.509 46.834 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.20 Å
ligand	W9Z	enzyme	Transferase E.C.2.7.10.1 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Lessons from (S)-6-(1-(6-(1-methyl-1H-pyrazol-4-yl)-[1,2,4]triazolo[4,3-b]pyridazin-3-yl)ethyl )quinoline (PF-04254644), an inhibitor of receptor tyrosine kinase c-Met with high protein kinase selectivity but broad phosphodiesterase family inhibition leading to myocardial degeneration in rats., Cui JJ, Shen H, Tran-Dube M, Nambu M, McTigue M, Grodsky N, Ryan K, Yamazaki S, Aguirre S, Parker M, Li Q, Zou H, Christensen J, J Med Chem. 2013 Sep 12;56(17):6651-65. doi: 10.1021/jm400926x. Epub 2013 Aug 29. PMID:23944843

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk] Biological Unit Coordinates (3zc5.pdb1.gz) 53 Kb LPC: Ligand-Protein Contacts for 3ZC5 CSU: Contacts of Structural Units for 3ZC5 Structure Factors (138 Kb) Retrieve 3ZC5 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3ZC5 from S2C, [Save to disk] Re-refined 3zc5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3ZC5 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3ZC5

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3ZC5, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3zc5_A] [3zc5] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3ZC5: [TyrKc ] by SMART

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