3ZC5 Transferase date Nov 15, 2012
title X-Ray Structure Of C-Met Kinase In Complex With Inhibitor (S (1-Methyl-1h-Pyrazol-4-Yl)-(1,2,4)Triazolo(4,3-B)Pyridazin- Ethyl) Quinoline.
authors M.Mctigue, N.Grodsky, K.Ryan
compound source
Molecule: Hepatocyte Growth Factor Receptor
Chain: A
Fragment: Tyrosine Kinase Domain, Unp Residues 1051-1348
Synonym: Hgf Receptor, Hgfsf Receptor, Proto-Oncogene C-Me Factor Receptor, Sf Receptor, Tyrosine-Protein Kinase Met;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac1
symmetry Space Group: P 21 21 2
R_factor 0.204 R_Free 0.256
length a length b length c angle alpha angle beta angle gamma
76.997 94.509 46.834 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand W9Z enzyme Transferase E.C. BRENDA

Primary referenceLessons from (S)-6-(1-(6-(1-methyl-1H-pyrazol-4-yl)-[1,2,4]triazolo[4,3-b]pyridazin-3-yl)ethyl )quinoline (PF-04254644), an inhibitor of receptor tyrosine kinase c-Met with high protein kinase selectivity but broad phosphodiesterase family inhibition leading to myocardial degeneration in rats., Cui JJ, Shen H, Tran-Dube M, Nambu M, McTigue M, Grodsky N, Ryan K, Yamazaki S, Aguirre S, Parker M, Li Q, Zou H, Christensen J, J Med Chem. 2013 Sep 12;56(17):6651-65. doi: 10.1021/jm400926x. Epub 2013 Aug 29. PMID:23944843
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (3zc5.pdb1.gz) 54 Kb
  • LPC: Ligand-Protein Contacts for 3ZC5
  • CSU: Contacts of Structural Units for 3ZC5
  • Structure Factors (138 Kb)
  • Retrieve 3ZC5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZC5 from S2C, [Save to disk]
  • Re-refined 3zc5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ZC5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ZC5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 3ZC5, from MSDmotif at EBI
  • Fold representative 3zc5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zc5_A] [3zc5]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3ZC5: [TyrKc ] by SMART
  • Other resources with information on 3ZC5
  • Community annotation for 3ZC5 at PDBWiki (http://pdbwiki.org)

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