3ZHE Mrna-Binding Protein date Dec 21, 2012
title Structure Of The C. Elegans Smg5-Smg7 Complex
authors S.Jonas, O.Weichenrieder, E.Izaurralde
compound source
Molecule: Nonsense-Mediated Mrna Decay Protein
Chain: A, C
Fragment: 14-3-3 And Alpha-Helical Domains, Residues 1-420
Synonym: Protein Smg-5
Engineered: Yes
Organism_scientific: Caenorhabditis Elegans
Organism_taxid: 6239
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Star
Expression_system_vector_type: Plasmid
Expression_system_vector: Pgex6p1

Molecule: Protein Smg-7
Chain: B, D
Fragment: 14-3-3 And Alpha-Helical Domains, Residues 1-395
Engineered: Yes

Organism_scientific: Caenorhabditis Elegans
Organism_taxid: 6239
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Star
Expression_system_vector_type: Plasmid
Expression_system_vector: Prsfduet1
symmetry Space Group: C 1 2 1
R_factor 0.2218 R_Free 0.2487
crystal
cell
length a length b length c angle alpha angle beta angle gamma
248.160 82.000 154.510 90.00 116.88 90.00
method X-Ray Diffractionresolution 3.00 Å
Primary referenceAn unusual arrangement of two 14-3-3-like domains in the SMG5-SMG7 heterodimer is required for efficient nonsense-mediated mRNA decay., Jonas S, Weichenrieder O, Izaurralde E, Genes Dev. 2013 Jan 15;27(2):211-25. doi: 10.1101/gad.206672.112. PMID:23348841
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (531 Kb) [Save to disk]
  • Biological Unit Coordinates (3zhe.pdb1.gz) 266 Kb
  • Biological Unit Coordinates (3zhe.pdb2.gz) 260 Kb
  • CSU: Contacts of Structural Units for 3ZHE
  • Structure Factors (446 Kb)
  • Retrieve 3ZHE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZHE from S2C, [Save to disk]
  • Re-refined 3zhe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ZHE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ZHE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ZHE, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zhe] [3zhe_A] [3zhe_D] [3zhe_B] [3zhe_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3ZHE
  • Community annotation for 3ZHE at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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