3ZIY Oxidoreductase date Jan 14, 2013
title Structure Of Three-Domain Heme-Cu Nitrite Reductase From Ral Pickettii At 1.01 A Resolution
authors S.V.Antonyuk, C.Han, R.R.Eady, S.S.Hasnain
compound source
Molecule: Copper-Containing Nitrite Reductase
Chain: A
Ec: 1.7.2.1
Engineered: Yes
Organism_scientific: Ralstonia Pickettii
Organism_taxid: 402626
Strain: 12j
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet-26b
Expression_system_plasmid: Pet26b-Rpnir
Other_details: Genbank Accession Number. Nc_010678
symmetry Space Group: H 3
R_factor 0.109 R_Free 0.122
crystal
cell
length a length b length c angle alpha angle beta angle gamma
128.177 128.177 86.314 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.01 Å
ligand CU, HEC enzyme Oxidoreductase E.C.1.7.2.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • electron transfer activity


  • Primary referenceStructures of protein-protein complexes involved in electron transfer., Antonyuk SV, Han C, Eady RR, Hasnain SS, Nature. 2013 Apr 4;496(7443):123-6. doi: 10.1038/nature11996. Epub 2013 Mar 27. PMID:23535590
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (342 Kb) [Save to disk]
  • Biological Unit Coordinates (3ziy.pdb1.gz) 1001 Kb
  • LPC: Ligand-Protein Contacts for 3ZIY
  • CSU: Contacts of Structural Units for 3ZIY
  • Structure Factors (11471 Kb)
  • Retrieve 3ZIY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZIY from S2C, [Save to disk]
  • Re-refined 3ziy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ZIY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ZIY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ZIY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ziy_A] [3ziy]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3ZIY
  • Community annotation for 3ZIY at PDBWiki (http://pdbwiki.org)

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