OCA Atlas for 3ZKD

3ZKD

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

ANP, MG

enzyme

Gene
Ontology

Chain	Function	Process	Component
C, F, H, A, B, D, E, G

Primary reference

Mycobacterium tuberculosis DNA gyrase ATPase domain structures suggest a dissociative mechanism that explains how ATP hydrolysis is coupled to domain motion., Agrawal A, Roue M, Spitzfaden C, Petrella S, Aubry A, Hann MM, Bax B, Mayer C, Biochem J. 2013 Sep 9. PMID:24015710

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (967 Kb) [Save to disk]

Biological Unit Coordinates (3zkd.pdb1.gz) 247 Kb

Biological Unit Coordinates (3zkd.pdb2.gz) 246 Kb

Biological Unit Coordinates (3zkd.pdb3.gz) 242 Kb

Biological Unit Coordinates (3zkd.pdb4.gz) 244 Kb

LPC: Ligand-Protein Contacts for 3ZKD

CSU: Contacts of Structural Units for 3ZKD

Structure Factors (432 Kb)

Retrieve 3ZKD in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 3ZKD from S2C, [Save to disk]

Re-refined 3zkd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3ZKD in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3zkd] [3zkd_A] [3zkd_B] [3zkd_C] [3zkd_D] [3zkd_E] [3zkd_F] [3zkd_G] [3zkd_H]

SWISS-PROT database:

Domains found in 3ZKD: [HATPase_c] [TOP2c ] by SMART

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