3ZKU Oxidoreductase date Jan 24, 2013
title Isopenicillin N Synthase With Substrate Analogue Ahcv
authors A.Daruzzaman, I.J.Clifton, P.J.Rutledge
compound source
Molecule: Isopenicillin N Synthase
Chain: A
Synonym: Isopenicillin N Synthetase, Ipns
Ec: 1.21.3.1
Engineered: Yes
Organism_scientific: Emericella Nidulans
Organism_taxid: 162425
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Nm554
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pjb703
symmetry Space Group: P 21 21 21
R_factor 0.161 R_Free 0.183
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.480 71.105 101.045 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.40 Å
ligand FE, HCV enzyme Oxidoreductase E.C.1.21.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe Interaction of Isopenicillin N Synthase with Homologated Substrate Analogues delta-(L-alpha-Aminoadipoyl)-L-homocysteinyl-D-Xaa Characterised by Protein Crystallography., Daruzzaman A, Clifton IJ, Adlington RM, Baldwin JE, Rutledge PJ, Chembiochem. 2013 Mar 18;14(5):599-606. doi: 10.1002/cbic.201200728. Epub 2013, Mar 6. PMID:23468426
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (119 Kb) [Save to disk]
  • Biological Unit Coordinates (3zku.pdb1.gz) 111 Kb
  • LPC: Ligand-Protein Contacts for 3ZKU
  • CSU: Contacts of Structural Units for 3ZKU
  • Structure Factors (823 Kb)
  • Retrieve 3ZKU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZKU from S2C, [Save to disk]
  • Re-refined 3zku structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ZKU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ZKU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ZKU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zku_A] [3zku]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3ZKU
  • Community annotation for 3ZKU at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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