3ZMG	Hydrolase	date	Feb 08, 2013
title	Crystal Structure Of Bace-1 In Complex With Chemical Ligand
authors	D.W.Banner, A.Kuglstatter, J.Benz, M.Stihle
compound		source
Molecule: Beta-Secretase 1 Chain: A Fragment: Extracellular, Residues 46-454 Synonym: 3.4.23.46, Aspartyl Protease 2, Asp2, Asp 2, Beta- Amyloid Precursor Protein Cleaving Enzyme 1, Beta-Site App Enzyme 1, Memapsin-2, Membrane-Associated Aspartic Protease Ec: 3.4.23.46 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 61 2 2	R_factor 0.175 R_Free 0.203
crystal cell	length a length b length c angle alpha angle beta angle gamma 102.519 102.519 171.805 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.74 Å
ligand	6Z0, DMS, NA	enzyme	Hydrolase E.C.3.4.23.46 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	beta-Secretase (BACE1) Inhibitors with High In Vivo Efficacy Suitable for Clinical Evaluation in Alzheimer's Disease., Hilpert H, Guba W, Woltering TJ, Wostl W, Pinard E, Mauser H, Mayweg AV, Rogers-Evans M, Humm R, Krummenacher D, Muser T, Schnider C, Jacobsen H, Ozmen L, Bergadano A, Banner DW, Hochstrasser R, Kuglstatter A, David-Pierson P, Fischer H, Polara A, Narquizian R, J Med Chem. 2013 Apr 16. PMID:23590342

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk] Biological Unit Coordinates (3zmg.pdb1.gz) 75 Kb LPC: Ligand-Protein Contacts for 3ZMG CSU: Contacts of Structural Units for 3ZMG Structure Factors (1042 Kb) Retrieve 3ZMG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3ZMG from S2C, [Save to disk] Re-refined 3zmg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3ZMG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3ZMG

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3ZMG, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3zmg_A] [3zmg] SWISS-PROT database: Domain organization of by SWISSPFAM

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