3ZPD Cell Adhesion date Feb 27, 2013
title Solution Structure Of The Fimh Adhesin Carbohydrate-Binding
authors N.A.J.Van Nuland, S.Vanwetswinkel, W.F.Vranken, L.Buts
compound source
Molecule: Fimh
Chain: A
Fragment: Carbohydrate-Binding Domain, Residues 10-167
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 1206108
Strain: J96
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: C43
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet24a
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStudy of the Structural and Dynamic Effects in the FimH Adhesin upon alpha-d-Heptyl Mannose Binding., Vanwetswinkel S, Volkov AN, Sterckx YG, Garcia-Pino A, Buts L, Vranken WF, Bouckaert J, Roy R, Wyns L, van Nuland NA, J Med Chem. 2014 Feb 7. PMID:24476493
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (945 Kb) [Save to disk]
  • Biological Unit Coordinates (3zpd.pdb1.gz) 39 Kb
  • CSU: Contacts of Structural Units for 3ZPD
  • Original NMR restraints for 3ZPD from PDB
  • Retrieve 3ZPD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZPD from S2C, [Save to disk]
    • View 3ZPD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3ZPD
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ZPD, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zpd_A] [3zpd]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3ZPD
  • Community annotation for 3ZPD at PDBWiki (http://pdbwiki.org)

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