3ZRA Hormone Receptor date Jun 15, 2011
title Structural Basis For Agonism And Antagonism For A Set Of Che Related Progesterone Receptor Modulators
authors S.J.Lusher, H.C.A.Raaijmakers, D.Vu-Pham, K.Dechering, T.Wai Lam A.R.Brown, N.M.Hamilton, O.Nimz, R.Azevedo, R.Mcguire, A.Oubrie, Vlieg
compound source
Molecule: Progesterone Receptor
Chain: A, B
Fragment: Ligand-Binding Domain, Residues 678-933
Synonym: Pr, Nuclear Receptor Subfamily 3 Group C Member 3
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet15b
symmetry Space Group: P 1 21 1
R_factor 0.212 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.305 64.114 69.932 90.00 96.53 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand ORB, SO4 enzyme
Primary referenceStructural basis for agonism and antagonism for a set of chemically related progesterone receptor modulators., Lusher SJ, Raaijmakers HC, Vu-Pham D, Dechering K, Lam TW, Brown AR, Hamilton NM, Nimz O, Bosch R, McGuire R, Oubrie A, de Vlieg J, J Biol Chem. 2011 Oct 7;286(40):35079-86. Epub 2011 Aug 17. PMID:21849509
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (175 Kb) [Save to disk]
  • Biological Unit Coordinates (3zra.pdb1.gz) 86 Kb
  • Biological Unit Coordinates (3zra.pdb2.gz) 86 Kb
  • LPC: Ligand-Protein Contacts for 3ZRA
  • CSU: Contacts of Structural Units for 3ZRA
  • Structure Factors (495 Kb)
  • Retrieve 3ZRA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZRA from S2C, [Save to disk]
  • Re-refined 3zra structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ZRA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ZRA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ZRA, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zra_B] [3zra] [3zra_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3ZRA: [HOLI ] by SMART
  • Other resources with information on 3ZRA
  • Community annotation for 3ZRA at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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