3ZUD Hydrolase date Jul 18, 2011
title Thermoascus Gh61 Isozyme A
authors H.Otten, R.J.Quinlan, M.D.Sweeney, J.C.N.Poulsen, K.S.Johansen, K.B.R.M.Krogh, C.I.Joergensen, M.Tovborg, A.Anthonsen, T.Tryfon C.P.Walter, P.Dupree, F.Xu, G.J.Davies, P.H.Walton, L.Lo Leggio
compound source
Molecule: Gh61 Isozyme A
Chain: A
Ec: 3.2.1.4
Engineered: Yes
Other_details: Methylation At 4-N-H1, And Two Cystines At C And C97-C101. N-Acetylglucosamine Glycosylation At N138.
Organism_scientific: Thermoascus Aurantiacus
Organism_taxid: 5087
Expression_system: Aspergillus Oryzae
Expression_system_taxid: 5062
Expression_system_strain: Jal250
symmetry Space Group: P 1 21 1
R_factor 0.155 R_Free 0.179
crystal
cell
length a length b length c angle alpha angle beta angle gamma
34.500 87.300 37.300 90.00 104.70 90.00
method X-Ray Diffractionresolution 1.25 Å
ligand CU, HIC, NAG, PEG, TAM enzyme Hydrolase E.C.3.2.1.4 BRENDA
note 3ZUD is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceInsights into the oxidative degradation of cellulose by a copper metalloenzyme that exploits biomass components., Quinlan RJ, Sweeney MD, Lo Leggio L, Otten H, Poulsen JC, Johansen KS, Krogh KB, Jorgensen CI, Tovborg M, Anthonsen A, Tryfona T, Walter CP, Dupree P, Xu F, Davies GJ, Walton PH, Proc Natl Acad Sci U S A. 2011 Sep 13;108(37):15079-84. Epub 2011 Aug 29. PMID:21876164
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (3zud.pdb1.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 3ZUD
  • CSU: Contacts of Structural Units for 3ZUD
  • Structure Factors (676 Kb)
  • Retrieve 3ZUD in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZUD from S2C, [Save to disk]
  • Re-refined 3zud structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ZUD in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ZUD
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ZUD, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zud_A] [3zud]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3ZUD
  • Community annotation for 3ZUD at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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