3ZVY Ligase Peptide date Jul 28, 2011
title Phd Finger Of Human Uhrf1 In Complex With Unmodified Histone Terminal Tail
authors N.Lallous, C.Birck, A.G.Mc Ewen, P.Legrand, J.P.Samama
compound source
Molecule: E3 Ubiquitin-Protein Ligase Uhrf1
Chain: A, B
Fragment: Phd Finger, Residues 296-367
Synonym: Inverted Ccaat Box-Binding Protein Of 90 Kda, Nucl Protein 95, Nuclear Zinc Finger Protein Np95, Hunp95, Ring Protein 106, Transcription Factor Icbp90, Ubiquitin-Like Ph Finger Domain-Containing Protein 1, Ubiquitin-Like-Containi Ring Finger Domains Protein 1;
Ec: 6.3.2.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_variant: Rosetta 2
Expression_system_vector: Phggwa

Molecule: Histone H3.1
Chain: C, D
Fragment: Residues 2-9
Synonym: Histone H3a, Histone H3b, Histone H3c, Histone Histone H3f, Histone H3h, Histone H3i, Histone H3j, His Histone H3l;
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 43 21 2
R_factor 0.181 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.300 42.300 182.700 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand CL, TRS, ZN enzyme Ligase E.C.6.3.2 BRENDA
Primary referenceThe PHD Finger of Human UHRF1 Reveals a New Subgroup of Unmethylated Histone H3 Tail Readers., Lallous N, Legrand P, McEwen AG, Ramon-Maiques S, Samama JP, Birck C, PLoS One. 2011;6(11):e27599. Epub 2011 Nov 11. PMID:22096602
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (3zvy.pdb1.gz) 25 Kb
  • Biological Unit Coordinates (3zvy.pdb2.gz) 26 Kb
  • LPC: Ligand-Protein Contacts for 3ZVY
  • CSU: Contacts of Structural Units for 3ZVY
  • Structure Factors (88 Kb)
  • Retrieve 3ZVY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ZVY from S2C, [Save to disk]
  • Re-refined 3zvy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ZVY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ZVY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ZVY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3zvy_D] [3zvy_B] [3zvy_A] [3zvy_C] [3zvy]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3ZVY: [PHD] [RING ] by SMART
  • Other resources with information on 3ZVY
  • Community annotation for 3ZVY at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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