464D Rna date Apr 14, 1999
title Disorder And Twin Refinement Of Rna Heptamer Double Helix
authors U.Mueller, Y.A.Muller, R.Herbst-Irmer, M.Sprinzl, U.Heinemann
compound source
Molecule: Rna (5'-R(Upapgpcpupcpc)-3')
Chain: A, C
Engineered: Yes
Synthetic: Yes
Other_details: Sequence From Trna(Ala) Of Escherichia Coli

Molecule: Rna (5'-R(Gpgpgpgpcp(Iu)Pa)-3')
Chain: B, D
Engineered: Yes

Synthetic: Yes
Other_details: Sequence From Trna(Ala) Of Escherichia Coli
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
26.375 28.995 28.995 110.37 96.62 96.62
method X-Ray Diffractionresolution 1.23 Å
ligand IU, NA, SR enzyme
Primary referenceDisorder and twin refinement of RNA heptamer double helices., Mueller U, Muller YA, Herbst-Irmer R, Sprinzl M, Heinemann U, Acta Crystallogr D Biol Crystallogr 1999 Aug;55 ( Pt 8):1405-13. PMID:10417408
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (464d.pdb1.gz) 16 Kb
  • Biological Unit Coordinates (464d.pdb2.gz) 15 Kb
  • LPC: Ligand-Protein Contacts for 464D
  • CSU: Contacts of Structural Units for 464D
  • Likely Quarternary Molecular Structure file(s) for 464D
  • Structure Factors (167 Kb)
  • Retrieve 464D in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 464D from S2C, [Save to disk]
  • Re-refined 464d structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 464D in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 464D
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 464D, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [464d_A] [464d] [464d_D] [464d_B] [464d_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 464D
  • Community annotation for 464D at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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