4A0X Transcription date Sep 13, 2011
title Structure Of The Global Transcription Regulator Fapr From Staphylococcus Aureus
authors D.Albanesi, M.E.Guerin, A.Buschiazzo, D.De Mendoza, P.M.Alzari
compound source
Molecule: Transcription Factor Fapr
Chain: A
Synonym: Fatty Acid And Phospholipid Biosynthesis Regulator Repressor Factor Fapr;
Engineered: Yes
Organism_scientific: Staphylococcus Aureus
Organism_taxid: 1280
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_variant: Plyss
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet15b
symmetry Space Group: H 3 2
R_factor 0.196 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
116.580 116.580 123.230 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
ligand ACT, MES, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural Basis for Feed-Forward Transcriptional Regulation of Membrane Lipid Homeostasis in Staphylococcus aureus., Albanesi D, Reh G, Guerin ME, Schaeffer F, Debarbouille M, Buschiazzo A, Schujman GE, de Mendoza D, Alzari PM, PLoS Pathog. 2013 Jan;9(1):e1003108. doi: 10.1371/journal.ppat.1003108. Epub 2013, Jan 3. PMID:23300457
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (4a0x.pdb1.gz) 363 Kb
  • LPC: Ligand-Protein Contacts for 4A0X
  • CSU: Contacts of Structural Units for 4A0X
  • Structure Factors (177 Kb)
  • Retrieve 4A0X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4A0X from S2C, [Save to disk]
  • Re-refined 4a0x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4A0X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4A0X
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4A0X, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4a0x_A] [4a0x]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4A0X
  • Community annotation for 4A0X at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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